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We highly recommend using either the Python LabKey API or the R LabKey API to query the Genomics England clinical/phenotype data.

Configuring access

(warning)(warning) You firstly need to provide your credentials to the API so that you can access the data you are allowed.(warning)(warning)

This only needs to be one once in order to use the API.


In case the RLabKey API is incorrectly setup, please have a look here:

LabKey curl_fetch_memory error
If this does not resolve the issue, and you still have problems using the R LabKey API, please contact the Service Desk.