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Below you will find some instructional videos about using the Research Environment and its tools.

If you do not yet have access to the Research Environment go to GeCIP and your access to data to find out how to get an account.

If you have any suggestions for further videos you would like to see, please contact us on [email protected]


If you are viewing this page inside the Research Environment, the videos embedded below will not work.
Instead, please visit this page outside the RE in your web browser at research-help.genomicsengland.co.uk.

What is the Research Environment?

Logging in to the Research Environment

Research Environment folder structure

filesfolders.mp4

Using the command line

Introduction to LabKey

Labkey tables

labkeytables.mp4

Setting up the RE to use the Labkey API

netrc.mp4

Using the Labkey API in R

labkey_api_r.mp4

Using the Labkey API in Python


Importing and exporting files with Airlock

Import

airlockimport.mp4

Export

airlock.mp4

Using the Data Discovery Portal

Participant Explorer: How to build a cohort


Participant Explorer: How to build a cohort with mapped concepts


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